for Cancer

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ACTDrug™ is the most efficient and cost-effective cancer genome sequencing platform. With small amount of DNA samples, ACTDrug can scan thousands of mutational hotspots to evaluate the mutational status for widely used targeted anticancer drugs.

207 amplicons for 50 important oncogenes and tumor suppressor genes, 1,636 COSMIC cancer hotspots are covered.

Covering 31 oncogenes, e.g. EGFR, KARS, BRAF, and 19 tumor suppressor genes, e.g. TP53, RB1, APC, for selection of cancer therapy. Actionable drugs including 32 US FDA approved cancer targeted therapies, and 67 investigational drugs.

Our report generating engine utilizes standard reference database, in-house sequencing database, and manually curated drug-gene interaction database to achieve a comprehensive and therapeutically-relevant interpretation. Results are presented in a custom-designed graphic format to deliver intuitive and publication-ready reports.

Specific

Service ACTDrug™
Targets Hotspot regions of 50 oncogenes and
tumor suppressor genes
COSMIC Mutation 1,636 COSMIC mutations
Sequencing Mean Depth >1,000x
Input DNA Required 50 ng
Starting Materials Frozen tissue, FFPE tissue, core needle biopsy tissue, CTC, ctDNA, and blood
Report Sample report and statistical data

Results and Statistical Analysis

Clinical Research Data:

  • Individual sample report
    1. Sequencing QC report
    2. Variant alteration description
  • Project report
    1. Mutation pattern by project cohort
    2. Distribution of sequence variants
    3. Distribution of non-synonymous mutation by sample
    4. Signaling pathway involving variants
    5. Comparing mutation spectrum of 5 selected genes with TCGA data

Statistical Results:

  • Sample > 40
    1. Group-wise variant comparison
  • Sample > 40, survival data available
    1. Kaplan-Meier analysis (including log-rank test)
    2. Cox Regression analysis (including hazard ratio)

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Gene List

ACTDrug™   Gene List
ABL1 EGFR GNAQ KRAS PTPN11
AKT1 ERBB2 GNAS MET RB1
ALK ERBB4 HNF1A MLH1 RET
APC EZH2 HRAS MPL SMAD4
ATM FBXW7 IDH1 NOTCH1 SMARCB1
BRAF FGFR1 IDH2 NPM1 SMO
CDH1 FGFR2 JAK2 NRAS SRC
CDKN2A FGFR3 JAK3 PDGFRA STK11
CSF1R FLT3 KDR PIK3CA TP53
CTNNB1 GNA11 KIT PTEN VHL